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#### What analysis module should be updated and why?
`tumor-normal-differential-expression` needs to be updated to generate a TCGA differential gene expression (DGE) table, because TCGA data wi…
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### Operating System
Other Linux (please specify below)
### Other Linux
Rocky 8
### Workflow Version
v0.4.1
### Workflow Execution
Command line
### EPI2ME Version
v0.4.1
### CLI command run…
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I have the final output for each correlation run which is a `*high_cor_matrix.txt` file with splice events + correlation value + p-value for a specific pathway.
But there is no sample level or gro…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/baerlachlan/tadar
Confirm the following by editin…
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May i ask 1 question:
if data is already pseudobulk object from scRNAseq data with logCPM value, how can i change it back to a seurat object with counts value? Can i still use above method to turn …
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New projects (5):
1. [Cellular development and evolution of the mammalian cerebellum](https://data.humancellatlas.org/explore/projects/279f1766-3319-4e3c-9f99-6fb59ba9b3e5)
1. [Dysregulated lung…
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Computed with all extras:
console:
```
free_app.5.te2m7kgre7qo@ip-172-31-21-2 | [INFO][2023-07-31 15:39:09][1843MB] --- [computePGX:on_process_error] ERROR: process 1 completed with an e…
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May i ask 1 question:
if data is already pseudobulk object from scRNAseq data with logCPM value, how can i change it back to a seurat object with counts value? Can i still use above method to turn …
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Some plots in Differential expression > top genes > expression of top differentially expressed genes have their margins set incorrectly and the title is being clipped by the card border
see user fe…
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Using a reduced version of the example dataset, the base pgx pipeline fails. See code below:
```r
get_mini_example_data