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Nullarbor seemed to stop during assembly stage using spades - I couldn't see any error message. I found 2 sequences that were low coverage (9x and 17x), and when I re-ran nullarbor in the same folder …
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### Checklist
- [X] There are [no similar issues or pull requests](https://github.com/micom-dev/micom/issues) for this yet.
- [X] The request is *not* specific for MICOM Qiime 2 plugin (q2-micom)
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Hell Dashing2 developer,
Dashing can be use for genome derelication in nt format but I am wondering wither it is an option to have it also work for amino acid sequences (all gene of a genome in ami…
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Hello, I'm a graduated student studying bioinformatics in South Korea.
I'm trying to do detect extrachromosomal DNA (ecDNA) in nanopore long-read targeted sequencing data.
I followed the workflow …
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Dengfeng,
Thank you for the development and support of purge_dups. I have a hicanu assembly from 38x coverage of PacBio Hifi reads of a repetitive, heterozygous (~50% and ~2.1%, respectively, by je…
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Hi:
I am studying a non-model diploid mammal species with a large genome size (~6GB). I have 30X Hifi data, as well as Hi-C data from Dovetail Genomics using their Chicago libraries. I have made an a…
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Hello, my name is Andrea and I am a bioinformatician who is currently working with SARS-CoV-2 sequences in order to identify quasispecies within given samples. I have been trying to use CliqueSNV so a…
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If I install RiboseQC for all users (via `sudo R`) and then try to compute as a user (via `R`), then the computation fails:
```
$ sudo R
> install.packages("devtools")
> library("devtools")
> i…
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Hello,
I've been trying to run AutoHiC for two datasets from scratch. In both cases bwamem, juicer, 3d-dna steps seem to finish correctly, at least they didn't report any critical errors. But on th…