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I went into this issue during the example run. Could you give some suggestions on solving this? I followed exactly the instruction online for the installation.
[Tue Feb 12 14:40:34 2019]
Error…
solna updated
5 years ago
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Hello,
I plotted different samples with MAGs as input, and the fastq metagenomic data, and I get as result 'binned' and 'unrecovered'. Unrecovered means unbinned in this case? I want to show simult…
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[67_77_87.pdf](https://github.com/ablab/spades/files/3046307/67_77_87.pdf)
[87_93_95.pdf](https://github.com/ablab/spades/files/3046308/87_93_95.pdf)
Dear developers.
Please check the attached …
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
3.6.3 (default, Oct 17 2017, 14:49:00)
[GCC 4.9.2]
CPython
Linux-3.16.…
ghost updated
5 years ago
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Can the kmers corresponding to a partition be recovered?
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Improve CAT taxonomy by being less strict
-r 5
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Hi,
I receive an error when I'm trying to download the databases with:
atlas download --db-dir databases/atlas/
on several systems.
KeyError in line 131 of /home/data/galaxy_tool_dependencies/_c…
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Using canu1.6 on MacOSX 10.10.5
canu -d foldername -p name genomesize=100m gnuplotTested=true -nanopore -raw "metagenomeReads.fastq"
Hi all.
I have been attempting to run canu on metagenomic…
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I have a gut metagenome that I have classified using kraken2 and a custom database of all genomes in NCBI RefSeq. Compared to other methods, e.g. Metaphlan2, kraken2 seems to identify far more speci…