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Hello msbentsen and thank you for creating TOBIAS. I have some questions coming from a problem:
I have performed all TOBIAS steps from ATACorrect and I have created a few networks without any probl…
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Thanks iDEP develper team for your great efforts and much useful app !
I would like to use iDEP even without connecting to the net.
So, I try installing iDEP locally according to "To run iDEP on y…
tyaoi updated
3 years ago
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I was wondering if it would look best to show the validations before or after the CPTAC analysis (i.e. validations as figure 3 or 6?). The validations figure would include the AKT prediction of the EB…
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Hi @simonvh
I ran `gimme motifs` on motif database JASPAR2020_plants, but it seems the way I set the command line may be wrong as I got this error `sqlite3.DatabaseError: file is not a database`:
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jhammelman/spatzie
Confirm the following by editi…
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Hi,
I am working on insect data, as suggested by earlier posts, I used createPwm.py to create jaspar_insect. But when I run the motifanalysis-matching does not load motifs (0 motifs). Apart from defa…
RadPa updated
3 years ago
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Currently, there are several functions that need to call different scripts or binaries from HOMER:
- `findHomer`: search for file in path
- `prepareHomer`: prepare a binned motif enrichment analys…
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Hi Shujun,
First thank you very much for EDTA!
I have been using EDTA to identify TEs in a set of fungal genomes. I am using a self-made singularity container for this because I am running this…
reslp updated
3 years ago
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### **Summary**
- Hi, I try to compile on the current machine phantomjs, build the phantomjs environment, there is a problem when executing the following commands (I use root to operate)
- The compi…
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Hi,
I cloned the repository and hopefully satisfied all the software installation requirements.
I ran ```./install/validate.py config/bulk-config.json --ignore-input-output --software ``` without an…