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Hello,
We are trying to run nnUNet inference with Task007_Pancreas:
Video below is 10x speed:
https://user-images.githubusercontent.com/19271735/131428864-8f8cbdab-b416-47a8-9b7b-fcc2aa2a5fde…
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Hello, I encounter a error when run the Cell assignment part:
> data2 rawcounts2
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See thread here: https://twitter.com/compbiologist/status/775100282489430018
relationship to endo and exo systems here:
we model a…
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In the Subtask 2 of AbdomenCT-1K Fully Supervised Learning Benchmark, it said that the training set is adapted from MSD Pancreas (281 cases) , LiTS (40 cases) , and KiTS (40 cases), where the cases ar…
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Text def:
**A cell that originates in the neural crest**, that has certain cytochemical and ultrastructural characteristics and is found scattered throughout the body; types include melanocytes, the …
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I started a test run with `make test` but the log was greater than my terminal history. Here is the end of it, along with a few other commands showing the branch/commit and variable set.
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> 1) data_loader.ipynb
For context, I am setting ``` basedir = '/Users/soeren.becker/repos/sfaira/sfaira/data' ```.
The first thing that I noticed is that, in contrast to the notebook from the githu…
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Great job on the scib pipeline. I imagine it was a big headache getting all of these methods to work. I was wondering if the benchmark data set h5ad files were available for download? They seem to be …
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I get error messages when I try to convert custom annotation files with SAUtils. They are of two different types, but both boil down to a missing possibility to have multiple entries for the same chan…
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Hello!
This may be a simple question, but what if, in the following code from the vignette, I wanted to not just make `fluidigmc1 `the query, but also `smartseq2`?
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pancreas.query