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Hi Dr Bergen,
I got splicing rate (β) through scv.tl.velocity(adata,mode='dynamical').
I found some β values were more than 1 and the most β values were less than 1 and more than 0.
And I foun…
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Right now, each dataset only specifies the `location`** for each layer, but not the other settings for the layer, such as `opacity` and other rendering settings. We should store default values for th…
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- [ x] Additional function parameters / changed functionality / changed defaults?
- [ ] New analysis tool: A simple analysis tool you have been using and are missing in `sc.tools`?
- [ ] New plott…
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These terms do not yet exist in DO. Please advise if these can be created or how should they refer to DOID. Thank you.
new term label | proposed parent term | parent DOID
mucinous appendix adeno…
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Dear CellRank maintainers,
I lately went back to your package after the latest updates you have made, but I have memories of earlier versions having tutorial of the Pancreas dataset where 4 term…
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**when I execute the command :**
_scv.pl.velocity(adata, ['Cpe', 'Gnao1', 'Ins2', 'Adk'], ncols=2)_
**it gives the following error:**
_>>> scv.pl.velocity(adata, ['Cpe', 'Gnao1', 'Ins2', 'Ad…
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From the CL meeting on August 18th, 2021:
Shall we automatically close existing issues that have not been updated in the past 3 years, as we have recently done for Uberon?
If so:
- [ ] Shall an…
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#### What analysis module should be updated and why?
`tumor-gtex-plots`
#### What changes need to be made? Please provide enough detail for another participant to make the update.
FNL would…
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...
I am walking through the tutorial from cellrank(https://cellrank.readthedocs.io/en/latest/pancreas_basic.html), I have a interpretation/conceptual question that I am hoping you can quickly help…
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...
```python
cr.datasets.pancreas()
```
```pytb
HTTPError Traceback (most recent call last)
in
----> 1 adata = cr.datasets.pancreas()
~/miniconda…