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Researchers need to be aware of which data are single-cell vs single-nucleus so that they can take special care to ensure proper integration.
Most contributors don't provide it automatically because …
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* get the "global" count of Proteomics to match the actual number of results in the portal. Currently is listed as 38 proteomics results, should be 34 to match what's coming up as the count for proteo…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/mrbakhsh/deepCE
Confirm the following by editing …
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Dear Mathias,
IceR is an exciting and useful tool! Could you please comment on processing output files? Do you have any recommendations? For instance, I was thinking of piping the output directly…
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I don't understand what is going on there, but if you go to e.g. Get Data -> UCSC main table browser and you select send to Galaxy, sometimes the request is executed with sessioncookie, and sometimes …
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Hi,
I've been trying to analyse label-free DDA data using the MSstats.csv file from IonQuant. When using the dataProcess function, I've noticed that the resulting object is not a list of 5 but a li…
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I was wondering if we should include an additional section called something like **_Types of experiments in bottom-up proteomics_** where we could explain the different things bottom-up proteomics can…
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See stagein directive in the module
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- Describe the issue or question:
https://github.com/Nesvilab/philosopher/discussions/276#discussioncomment-1302874
I would be really helpful if one could develop a FragPipe workflow using the G…
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Hello,
I'm having trouble understanding the results from a SILAC run.
In the main proteome file, I can see the labelled proteins and how many labels there were, but i
[log_2022-05-12_16-05-47.txt…