-
https://mp.weixin.qq.com/s/hCjbUPXS_6pMVd8QRCeenQ
ixxmu updated
6 months ago
-
### Description of the bug
Hello-
I’m fairly new to the [#fetchngs](https://nfcore.slack.com/archives/C024915L4KB) workflow, and am trying to use it to download and prepare a specific 10X-format sin…
-
used nf-core/scrnaseq 2.3.0 which has some processes with nfcore/cellranger:7.1.0
The manifest ends up looking like this after running inspect_nf.py
```
{
"manifest": [
"nfcore/ce…
-
Hi, we are experiencing issues with the **clonalDiversity** function on our scTRCseq/scRNAseq dataset. We have 9 samples, and 3 of them seem to be computing erroneous results, ie the Shannon index is …
-
LOVE scCustomize!! However, I found something that doesn't seem to work.
This command:
raw_metrics sessionInfo()
R version 4.3.1 (2023-06-16 ucrt)
Platform: x86_64-w64-ming…
-
Sorry I cannot write more details due to a deadline, but is this normal?
I will get back to this when I have more time, but just wanted to share.
-
Hi,
When I run mixcr, `mixcr analyze smartseq2-vdj-full-length -s hsa --rna --threads 4 fastq_1.fastq.gz fastq_2.fastq.gz outdir` it throws the error Error while running command refineTagsAndSort j…
-
Hi Nick,
Can you help me run `cell2location` on this dataset using as input reference the Mathys et al snRNA-seq data?
Thanks!
Details:
* Mathys et al paper: https://doi.org/10.1038/s415…
-
### Project short name: SclerosisHumanLungCITESeq
### Primary Wrangler:
Arsenios
### Secondary Wrangler:
Ida
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folder…
-
Hi there!
First of all, I'd like to thank you for this useful tool. I think its protein-imputation capabilities from diverse reference datasets are very relevant. However, I have not been able to tes…