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Above test fails on local machine 100% of the time with following message:
- test renamed refs › test that bam with contigA instead of ctgA displays
expect(received).resolves.toBeTruthy()
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Hello, I'd like to extract a single sequence from a Diamond database. Is this possible? It would be analogous to this command in BLAST+
`blastdbcmd -db ref_viruses_rep_genomes -entry NC_001543`
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Hi,
I am facing problem in running Cannoli for BWA when running on a single cluster node. Please see my log file in the attachment for output. Thanks.
I have converted two paired-end fastq files…
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Hi,
I am trying to install on a cluster freebayes.
I have loaded these modules:
1) cmake/3.7.1
2) perlmodules/5.10_2
3) binutils/2.26
4) gcc/6.1.0
5) python/2.2713
I…
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Hi developers, I'm building an blank program (unmodified hello world main.rs) in order to see how the dependencies are being installed. Here is what I added to Cargo.toml:
```
[dependencies]
# rust…
mxygc updated
4 years ago
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Makefile 99: recipe for target 'bgzf.o' failed
fatal error: zlib.h: No such file or directory
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***
☝️ **Important announcement:** Greenkeeper will be saying goodbye 👋 and passing the torch to Snyk on June 3rd, 2020! [Find out how to migrate to Snyk and more at greenkeeper.io](https://greenkeep…
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Hi, Thanks for developing the pipeline to detect the SV. I got some error when I run the speedseq sv pipeline
```
[E::bgzf_read] Read block operation failed with error 33 after 0 of 4 bytes
Traceba…
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So far the memory limits during the Bruck is 2gb (2^31-1) per jobs.
Propose a method to overpass this limit.
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When I use bcftools combine all the genotype files, it give me an error.
bcftools concat -Oz -o merge.vcf.gz ALL.*.phase3_shapeit2_mvncall_integ
rated_v5a.20130502.genotypes.vcf.gz
Checking the…