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Hi there,
How can I use hifi asm to do a haplotype assembly using PacBio hifi long reads for the child and both parents? It's not clear to me what would happen if the parents files are long reads ra…
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Hello,
I am having trouble running taiji (v1.2.1.3) on some human RNAseq/ATACseq data which ends with this error:
```
[ERROR][07-29 18:51] ^[[0m^[[0m^[[31mRNA_Convert_ID_To_Name(deb6..) Failed:…
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Hey @PhilPalmer,
When we are running TCGA or GTEX data, would it be possible to add a couple parameters to STAR:
1) --outFilterScoreMinOverLread 0.33
2) --outFilterMatchNminOverLread 0.33
3) -…
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Dear author,
I have been getting an error in HHblits and I'm wondering if you might understand what is wrong. I tried to run the script with use_gpu=False (although I couldn't work out how this infor…
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**Describe the bug**
The current implementation of Picard and GATK products uses Java on our cluster without an explicit Java Heap Limit set. This means that Java will try to automatically detect and…
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Hi,
We were wondering if JOSS would accept a submission for describing an update to an already published bioinformatics pipeline (not in JOSS).
This update would add extra-functionalities, and open …
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The StreamFlow framework (https://streamflow.di.unito.it/) should be included among the CWL implementations. Please use the following reference to cite it:
Full Text:
```
I. Colonnelli, B. Cant…
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* Nanopore SOP: https://artic.network/ncov-2019/ncov2019-bioinformatics-sop.html
* what is the standard bioinformatic pipeline for Illumina data?
How much will we have to modify these existing pip…
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This issue is somewhat related to what is also discussed in other issues and may affect them, such as:
* https://github.com/fmalmeida/bacannot/issues/33
* https://github.com/fmalmeida/bacannot/iss…
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[Viral_Analysis](https://github.com/bioinformatics-hub-ke/BOSS-miniprojects/tree/main/Viral_Analysis)