-
**Original report on BitBucket by John Shepherdson (GitHub: [john-shepherdson](https://github.com/john-shepherdson)).**
----------------------------------------
**Linked to #447**
I am trying to un…
-
### **March 2, 2023**
### **Dan:**
I have updated our existing biomarker ER diagram, highlighting “mandatory" items in the model that form the core definition of a biomarker, based on the FDA/NIH …
-
This issue is related to issues 312 and 309:
https://github.com/microbiomedata/nmdc-metadata/issues/309
https://github.com/microbiomedata/nmdc-metadata/issues/312
@dehays and @dwinston to implem…
-
If processes and materials about DNA/metagenomics and RNA/metatranscriptomics are modeled separately, then they can reuse more general slots
cc @aclum @mslarae13 @anastasiyaprymolenna
-
nmdc-runtime (and thus JSON validation for metadata ingest) is currently [pinned to v3.2.0](https://github.com/microbiomedata/nmdc-runtime/blob/5dbf733778cc38cfb1878e191d437bb9894486b7/requirements/ma…
-
Title says it all.
I'm pretty certain this worked in older versions of the client (webin-cli-4.3.0.jar).
Part of the validation process seems to be to try and get info from https://www.ebi.ac.u…
-
**Description of the issue**
As part of the effort on submitting the microbe soil samples to Biosamples, we would like to query for timepoints.
In order to do that, we need to ensure that the fields…
-
1000 soils have NOM data. The DMS IDs are similar enough to the biosample names that mapping will be easy.
- [x] Provide mapping file to Yuri
- [x] Process NOM data
- [x] Ingest to dev for testing
- …
-
**1. What were you trying to do?**
**2. What did you want to happen?**
I was trying to map a new fastq file to a graph generated using a few genome sequences.
Step 1: vg construct -r Ref_genes…
-
- https://genomicsstandardsconsortium.github.io/mixs/soil_horizon/
- https://genomicsstandardsconsortium.github.io/mixs/horizon/