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Hi,
I'm try to run a first test with my own data. It's about 3 very closely related genomes, already aligned with Cactus. I'm preparing the configuration file following the instruction. I have a bu…
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Hello, Thank you very much for this program !
I am at the first step of preparing the input, yet I have an issue with deal_gff.py.
If I am not mistaken, I can modify and generate all required file…
hyyuu updated
9 months ago
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Hello,
I feel honored to have access to such a great tool!
I'm having a bit of a problem when I'm running it, but I don't know how to fix it, and I'm getting a bit of a message repeated in my nohup …
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Hello, I am currently running SComatic with scATAC data, but I encountered some issues when running the second step, BaseCellCounter.py. Here is my code and the output:
```
REF=/md01/nieyg/ref/hard-…
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Hello!
I have started working with the package and it seems to be working well so far! It looks like it could be very helpful for my work.
I was wondering two things:
1. How should DeepSNiF typ…
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mRNA destabilization
is not always "regulation of translation" (especially nuclear polyadenylation-dependent RNA catabolic process)
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The command:
`conterminator dna Trinity.fasta nt.fna.taxidmapping trinity.results tmp`
dies at crosstaxonfilterorf step
`tmp/2908263996980697262/conterminatordna.sh: line 59: 10751 Segmentation…
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mob_recon v3.1.8
Command:
```bash
mob_init -d /mnt/data/databases/mobsuite/db_20231221
mob_recon --outdir "mob_recon/sample1" --infile sample1.fasta --num_threads 8 --sample_id sample1 --databas…
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hi there,
I've got a problem importing files where some lines end with double tab:
If the file's first line has extra columns and then other lines have missing columns, then fill=TRUE solves the prob…
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**NB** TopoStats `< 2.0.0` is no longer actively maintained. If you have encountered an issue using this deprecated
version please try TopoStats `>= 2.0.0`, there are instructions on
[installation](…