-
@arnikz, I had a look at the RDF and was looking for gene resources... @Chris-Evelo told me that he and Barend had particularly in mind for @JonathanMELIUS to make link sets, so I am exploring what li…
egonw updated
7 years ago
-
I'm trying to find annotation data for GSE33377 (GPL5175) with no success.
I've already made various trials:
1. I used http://ailun.stanford.edu/platformAnnotation.php with the feature list, but it r…
nirnn updated
10 years ago
-
PTPRC and CD45 refer to the same gene P08575.
In cpdb both names are used in different files, in liana only PTPRC.
Can or does this cause problems?
-
**Use case**
I work for UCSC and we sometimes get reports that MACS2 or MACS3 files are not valid to loading into our browser. I'd like to help write a converter from all the MACS2/3 output files to …
-
I'm getting a barf-out when my VCF has an N in the ALT allele:
Command:
``` bash
topiary --mhc-cons --vcf ./test.vcf --output-csv 12n_test.csv --mhc-alleles B46:01 --ic50-cutoff 500 --mhc-epitope-l…
-
Hi Jessica and Arthur,
In GlyGen we have protein and glycan data for medically important virus species like SARS-CoV, and HCV. We are planning to submit the data for these species however the protein…
-
This is My error and Package ‘biomaRt’ version 2.56.1 cannot be unloaded :
```
ht
-
Dear Authors,
Thank you for this great tool!
I have been testing CrossMap with DBSNP v151 data and found one type of conversion that doesn't look correct.
For DBSNP rs202079816: given chr22:…
-
Dear Doctor，
I used a VCF file that mixed 400 samples to distinguish the source of cells. The script ran without any issues, but did not produce a result file that could be judged. I would like to …
-
Great paper! The methods state "The start and end positions and sequence of the 5’UTRs of all protein-coding genes were downloaded from Ensembl biomart (Human genes GRCh37.p13) and filtered to only in…
arq5x updated
4 years ago