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Hi!
My previous annotation with MAKER and BRAKER had ~97% complete BUSCO genes for the genome I have. This was consistent with outputs from BUSCO directly run on the genome. But this annotation had…
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Hello Alex,
I am running STAR 2.7.6a in a server. It fails in creating the genomeParameters.txt. It is also creating a core file such as core.139329.
The error file states:
starIndex_Align_Sol.…
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Hi, thanks for developing the PATRIC command line scripts. I have been using them for more than a week and I find them really useful
Today, my pipeline stopped halfway at the rast-add-features comm…
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I am trying Cenote-take. Everything was fine until running tbl2asn step. Kindly check the following logfile
```
[tbl2asn] ERROR: Invalid inference value tRNAscan-SE score:33.8
[tbl2asn] ERROR: In…
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I accidentally added --keep_intermediate to correct, it printed an error but continued
to execute rather than exit non-zero
```
python ../flair/flair.py correct --query flair.aligned.bed --genom…
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Hi, I decided to try configure [CHM13](https://github.com/marbl/CHM13#v11) reference, but didn't manage to do it.
* I presses "+" button and start filling the fields
* When editing **new** genome,…
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
**Describe the bug**
A clear and concise descriptio…
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Dear,
The gbff file in NCBI usually have follows format. There is all the sequence will be output when using `any2fasta` command, but how to just output the CDS sequence? Thanks.
```
LOCUS X…
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I am using a Windows system but I get the message "mc.cores is not supported on Windows"
Can I bypass this issue?
thank you for the help
> DMRichR::DM.R (genome = "hg38",
+ maxPe…
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Hi! I want to train augustus using a .gbff file I downloaded from ncbi https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/611/645/GCF_000611645.1_mono_v1/GCF_000611645.1_mono_v1_genomic.gbff.gz
But the…