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Currently, gnomAD can only be browsed by Ensembl genes / transcripts. It should also support RefSeq genes / transcripts.
This only applies to gnomAD v3.1+. This requires VEP annotations with RefSeq…
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In our lab we are conducting research focused on drought resistance in tomato species. Recently we were reviewing your paper, which presents a valuable de novo genome assembly for Solanum sitiens. we…
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Does the chr and pos in the GWAS file require a specific reference version, such as GRCh37 or GRCh38? Will this have an impact on the results?
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Goal is to have a structure-mapped version of the variations displayed in [nextstrain](https://nextstrain.org/ncov).
We envision the following required steps:
- parse [json data](https://data.nextst…
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Dear progressiveCactus,
I have 4 different assemblies of a human chromosome, including the reference and 3 alternatives. I would like to do a liftover of annotations from the reference to the 3 altern…
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Hi, there
The liftoff is a good software to do the annotation of the genome. I have used it to do the same work these days. When I runned the liftoff using the codes as follows:
/softwares/minicond…
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Downloading the genome_ref file is one of the slower steps.
```R
input_url
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It seems like karyoploteR is computing coverage in a different way than IGV.
I think that IGV is ignoring the reads that have pairs mapping outside the viewing region. In contrast, karyoploteR is i…
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Hello dear author, it's exciting to find this new tool!
I've been following Mellisa but gave up due to the lack of detailed annotation of genome features, could you please give a brief suggestion wh…
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I was running STAR from the linux static precompiled binary and I got this when trying to build the index.
./STAR --runThreadN 23 --runMode genomeGenerate --genomeDir data/index --genomeFastaFiles …