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I was trying to install libtorrent-rasterbar. I've successfully installed it before, not sure why it doesn't work now.
The exact copy-paste from command to error on Terminal:
```
$ brew install l…
ghost updated
6 years ago
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Hi,
Squaring off GATK4 RNAseq variant calling results runs into an assertion error about the input vcf.gz file.
My yaml is
```
# Template for RNA-seq using Illumina prepared samples
---
d…
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I'm running the following command
`canu -d ./Gene_Assembly -p Gene GenomeSize=7600 minReadLength=100 minOverlapLength=100 -nanopore-raw Merge_Output_File.fastq`
I'm getting error: `failed to cre…
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copyRefContigs() code is specific to output format for velvet contig names. Should have either an assembler option, or auto-generate grep pattern from composite genome headers.
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Hi Donovan,
Currently checkM reports "contamination" as a percentage. However, I think intuitively people think a contamination percentage should reflect **(1)** "the percentage of contigs that are…
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Doesn't matter what command is provided, the above is all the output I can get. Applies for both locally-built images and the image on docker hub. Any thoughts?
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I ran spades 3.10 as following:
`SPAdes-3.10.0-Linux/bin/spades.py -t 10 -k21,31,51,71 -o spadeswref --trusted-contigs ./virusgt1.fasta -s Hepacivirus.s.fastq --iontorrent`
The longest contig I g…
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__The goal of this task is to combine what I have learned from the previous genome assembly assignments to create a single script that assembles, evaluates, and annotates three different genome assemb…
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Dear Jon,
Thanks for your suggestion for setting up the funannotate in our HPC environment.
It works well with the parameters of --transcript_evidence and --protein_evidence.
But when --rna_…
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Hi everyone,
I just tried ragout, and it seems to work nicely, I'm pretty satisfied with it :).
But while I'm messing around with it, I see there's one issue...well, not issue, since it's pretty o…