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Weekly progress update of my project
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Hi,
I use the jellyfish (47 Gb Illumina PE150) to count different mer, but I see the 21mer result is 874 Mb, the 17mer result is 437Mb. It is very strange that three peaks in the 17mer plot, but th…
baozg updated
4 years ago
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Hello, professor
I was running the pipeline to align my genome assemblies with mm10 genome via slurm: ` ./make_chains.py target query mm10.fasta Bsu.softmask.fasta --pd mm-Bsu -f --chaining_memory …
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Hi Ryan,
Things continue to work exceptionally well with Unicycler - thank you for such an easy yet powerful program. I'm getting hung up trying to complete one last sample (which is both pretty good…
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First, my complements on STITCH: I'm frequently critical bioinformatics software, but STITCH seems very well polished.
I am, however, just getting started using it. My immediate goal is to impute …
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a lot of our ancillary documentation and workflows (genome-grist and spacegraphcats) suggests doing k-mer trimming of metagenomes, e.g. with trim-low-abund.
but, for gather in particular, this is n…
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**Describe the bug**
Flowing the instructions, I chose the --keep-up 1 to callpeak with macs2 for bacterial ChIP-Seq data. But, it reported "Too few paired peaks So I can not build the model! ...". T…
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This is the code they used in `CAMI II`
```
metaquast -r /path/to/set0-9/ref-genomes \
-t 24 --unique-mapping --no-icarus -o /path/to/output_dir \
-l megahit-103-df,megahit-113-df,megahit…
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Hello Jens,
I tried to use gemoma to annotate the genome and
the input format for gff file is the same as the test data so I don't understand why it didn't work out
java -jar GeMoMa-1.9…
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While running phastCons on an alignment generated by progressiveCactus, we are facing an invalid idx_offset error.
To explain more on the issue:
We are trying to generate whole genome alignments and…