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Dear Alex;
I am performing RNA sequence analysis to determine the DE genes in a human cell line sequenced with Ion Proton. I am using the default STAR settings and I get a low percentage of uniquel…
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I can not download the data you given, and can you tell me what is the crop in you project?
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We currently include clipped (either S or N cigar operator) reads in the pleup at a locus. For RNA-seq this is a performance issue (and arguably a programming gotcha) since often the vast majority of …
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Hello,
I have an issue while running MANTIS on exome datasets.
I wrote the following code lines :
`python2.7 mantis.py -b ../../Test_MANTIS/genome_scan.bed --genome ../../Test_MSISensor/Indexe…
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For TG, the 7 SNPs should not yield a Nan value for 50kb collapsed SNPs
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Hi Thibaut,
I am trying to use snapclust for hybrids identification in a diploid plant pathogenic fungs.
I have genome-wide variants data of 110 individuals in a multi-sample vcf file.
I read th…
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Hello,
Do you think it is possible to use LDna on a large number of SNPs (>1 000 000) obtained through Whole-genome sequencing? If so what would you recommend to build the LD matrix?
Thanks
Claire
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I am looking for some advice on running the preprocess_ddradtags script. I have 1 lane of 2x125 bp ddRAD sequences, which are high quality. The right adapters are the standard Peterson ones (adapter, …
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I'm not able to print FFT results with ij.py.show!
```python
import skimage
import imagej
import numpy as np
from skimage import io
import imagej
import imglyb
from jnius import cast
from j…
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in the first version users can switch tags but not select many tags at the same time.
Selecting many tags at the same time can lead to two different results:
- mark all nodes tagged with **any** of …