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**Is your feature request related to a problem? Please describe.**
no problem per se, just a tool that *could* know all the variables needed for calculation
**Describe the solution you'd like**
…
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I have installed rnaflow on ubuntu. After I installed nextflow and conda, I try to run the test with the following command:
nextflow run ~/software/rnaflow -profile test,conda,local
This is the o…
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The following is courtesy @heuermh
> In nf-core, it is a best-practice (and generated by the nf-core getting-started template) to capture software versions
>
> https://github.com/nf-core/rnaseq/…
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some methods for consideration
- versions YAML for multiqc, some examples here;
- https://github.com/nf-core/rnaseq/blob/1817d14a3a3a7d130b1fd729c5c3f9a6547b4fd5/subworkflows/nf-core/utils_nfc…
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If a relative path is provided, it is possible that Exomiser is trying to infer the absolute path but prepending the provided path with the absolut path of the directory where Exomiser is running from…
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Just finished my rescheduled meeting. The format we agreed is:
The existing species_releases folder will have per species folders in it. When you're ready to start downloading you'll move the exist…
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## Sanitizing user-provided params
In Nextflow as it currently stands, any param that is used in a process gets copied to `.command.sh` without validation. Although filenames are properly processed…
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Hello,
I have error messages with the following command on the dataset provided. Could you let me know if these errors can be ignored? Thank you.
nextflow run main_AmrPlusPlus_v2_withRGI.nf -pro…
srjun updated
3 years ago
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# Intro
Hello! Thank you so much for creating and maintaining such a helpful tool!
# Request
I am under the impression you are embedding the `-with-report` output in the Tower Report.
I do…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v1.3.1
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No response_
### EPI2M…