-
Hi, where to download the plasmid fasta file？I downloaded the ZIP archive form https://ccb-microbe.cs.uni-saarland.de/plsdb/plasmids/download/， but not found the fasta file. I want to use the fasta to…
-
Just noticed this error in the _middle/end_ of the `mob_init` process?
```
2019-11-05 12:30:36,543 INFO: Sketching complete plasmid database [in /home/linuxbrew/.linuxbrew/opt/python/lib/python3.…
-
* mbin version:1.1.1
* Python version:2.7
* Operating System:Linux Ubuntu
### Description
"""How are you.I am honor to send emails to you ask some questions.
After reading your article 'Metag…
-
When plasmid names do not begin with a lower case 'p', please add that to those plasmids.
E.g.
* (Myc)2-apm4
* ACG-KO
* V/A6-gal
will become:
* p(Myc)2-apm4
* pACG-KO
* pV/A6-gal
-
I saw that you filter the VirSorter output to only collect phages from the files
* VIRSorter_cat-1.fasta
* VIRSorter_cat-2.fasta
````
cat !{results}/Predicted_viral_sequences/VIRSorter_cat-[1,…
-
Hello,
I'd like to be able to run Flye until a certain stage. With our genome, the repeat graph creation step takes a very long time (>2 days) on a single thread, and I'd like to be able to run thi…
-
Hi,
I have just started to assemble bacterial strains from my first MinION run. In the polishing step I get the error OSError: [Errno 26] Text file busy: '/media/sf_BioLinux-vymena_dat/Run1_part_da…
-
If I select all Clostridium genomes, the LCA of the selected genomes is still indicated as "root".
_[Original issue](https://github.ugent.be/unipept/unipept/issues/380) by @pdawyndt on Sun Jun 15 20…
-
I got my bacteria genomes successfuly, but I had some problems. I used checkM to check my genomes but the contamination are very high, about 30%-80% are contamination in every genome. Normally, the ge…
-
PHASTER (PHAge Search Tool Enhanced Release) is a significant upgrade to the popular PHAST web server for the rapid identification and annotation of prophage sequences within bacterial genomes and pla…