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Dear Kevin, thank you for your reply. I tried to install [Transposon Annotation Tools]. First few comments were fine, i got error while running, mamba install -y -c derkevinriehl transposon_annota…
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Hello dear friends,
Thanks for your proving this software. I'm wondering how to cite **RepeatMasker** and **RepeatModeler**? These software called other softwares, like Recon, TRF, RMBlast, RepeatS…
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Hi,
When running gridss_annotate_vcf_repeatmasker from gridss/gridss:2.12.2 on AWS cloud, I get the following error:
```
Mon Oct 18 09:46:45 UTC 2021: Using 8 worker threads.
Mon Oct 18 09:46:45…
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**Are you using the latest release?**
funannotate v1.8.13
**Describe the bug**
I have set "-other_gff compreh_init_build.gff3:10" It was recognised by funannotate, was set source to other_pred1. …
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Some package, for example [WRF](https://www.mmm.ucar.edu/weather-research-and-forecasting-model) requires answering questions interactively during `./configure` to generate a proper config file. Easy…
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Hi Shunhua,
Thank you for this software! At the first glance, it has everything that I was looking for identification of TE insertions including allele frequency. Test run passed successfully but w…
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Hi, I am trying to run the DROP variant calling pipeline on a group of around 30 skeletal muscle rnaseq data.
I am running the pipeline on a virtual machine with 16 CPU and 64 GB of RAM, OS Ubuntu …
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Hi,
I'm trying to run BRAKER/2.10 using only proteins of short evolutionary distance. My script is :
```
braker.pl \
--cores=8 \
--softmasking=1 \
--genome=/home/CAM/qlin/CE10_Genome/versio…
qslin updated
2 years ago
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**Are you using the latest release?**
Yes, installed fun annotate via conda (v1.7.4, installed 4 days ago)
**Describe the bug**
After having installed fun annotate via conda I have been trying …
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Thank you for TElocal. I was able to obtain the .cntTable containing TE expression on a locus level. However, I am wondering how to map a specific TE locus back to genomic coordinates (mm10)? Thank yo…