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Hello Jonas,
Thank you for your very interesting tool.
After omitting the genome frokm my code and kept on regions = StringToGRanges(Links(object[['ATAC']])$peak), it was successfully executed. The…
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Hello,
I am running MD simulation on Protein-DNA-RNA complex. However, The DNA and RNA are dissociated in first step of the Equilibration phase. Could you please advise on this matter ?.
Attach…
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Dear, developers
Hmm... I have the problem there are no such directories and command not found, I can't figure it out. I am using this script in a package with a full cenote-taker2 installation.
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@duct317
I tried running `scISR` on my dataset as follows. Surprisingly, I do not see the number of genes expressed go up. They stay the same. I used the following code
```r
library(scISR)
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It could fix easily....or not
`WARN (bpy.rna): C:\Users\blender\git\blender-vdev\blender.git\source\blender\python\intern\bpy_rna.c:1343 pyrna_enum_to_py: current value '0' matches no enum in 'Char…
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Hello,
I don't know if I missed it in the article or in the vignette but I'm wondering exactly how the pseudo replicates are made, in particular, when using a seurat object.
Thank you for your …
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When a constructed view has multiple tabs, a Magma `/retrieve` request is made for each tab. However, if a user enters "Edit" mode before all those requests return, every time a request returns, the p…
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See here: https://pypi.org/project/seqfold/
This is a substitute for ViennaRNA etc, but may not be quite as good. However, far more convenient.
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Duplicate reads can arise from PCR duplicates as well as high expression. Ideally we would like to omit PCR duplicate reads. UMIs allow for this, however most commercial kits currently do not provide …
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Dear Sir,
My name is Yashpal Ramakrishnaiah, doing bioinformatic research in BioinformaticsLab led by Dr. Sonika Tyagi, Monash University, Melbourne, Australia. We are working on a web based tool c…