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Hi all. I'm trying to update our drop pipeline to a more recent version (1.2.1) than the one we used for our JCI paper (2020). I'm starting with the aberrant expression module but am unable to get it …
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Problem: Multiple errors seen across a significant number of samples in latest sample run.
Example errors from log `/data/khanlab2/processed_DATA/ngs_pipeline_SJ031111=SJEPD031111_D1=20220911_20221…
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Hi! Hope you are all doing well 🙂
With the recent stable release of the more modular Nextflow DSL2 we are now migrating to using Biocontainers per process which is working amazingly well. As a pro…
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### Description of feature
I find the documentation for the use of reference genomes from iGenomes lacking (see https://nf-co.re/rnaseq/3.9/parameters#reference-genome-options). Apart from "GRCh38", …
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Great work!.
Any plans for making a single cell implementation similar to the one`seurat` implementation of DESeq2 for single cell.
Thanks,
Shams
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Update the following URL to point to the GitHub repository of
the package you wish to submit to Bioconductor
Repository: https://github.com/KJeynesCupper/mobileRNA
Confirm the following by editin…
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Hi @juneb4869 ,
Sorry to bother you again. I have successfully run MeRIPseqPipe on my own data. Now I have a question about **dpulicate reads after alignment**. In my data, I have ~20-47% duplicate…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/metamaden/lute
Confirm the following by editing e…
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Hi!
So the issues about this are already closed since the change has been made in dev, it is known and solved. I am working on a release that I hope will be out soon. In the meantime y…
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### Description of the bug
WARN: Unable to start plugin 'nf-amazon' required by s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357076_1.fastq.gz
WARN: Got an interrupted exception…