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Field types could be used to validate the shape of contribution documents. This would help keep type information in sync with actual documents.
Field types don't contain any information about lists …
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Hello,
I am getting this error: error, no TPM value specified for transcript [TRINITY_DN0_c0_g1_i11] of gene [TRINITY_DN0_c0_g1] for sample 5_gene_count at /opt/software/Trinity/2.15.1-foss-2022a/t…
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look into why we are getting `NA` in `sleuth_lrt()` and look into what `p.adjust` is doing in this situation (treating them as ones?)
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When I try to retrieve Gene Expression Data through this code:
query$rnaseq
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# Context
The following organisms appear in the corpus:
- Callithrix jacchus
- Gorilla gorilla
- Macaca mulatta
- Pan troglodytes
- Sus scrofa domesticus
allowed by the current requiremen…
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Dear developers,
I have just downloaded `SpatialOmicsOverlay ` and I am hoping to plot some gene expression data from a GeoMx object to an OME-TIFF file that I downloaded from the GeoMx DSP Control C…
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Hi,
I am working with the new CMI-MBC data and was using TCGABiolink for DEGs identification..
Now at step
```
dataDEGs
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Hi,
I tried to use how_are_we_stranded_here to figure out the strands of my RNA-seq data.
Here are my commands:
`check_strandedness --gtf Midas.annotation.v2.6.gtf -r1 Aast_14_trimmed_R1.fq.g…
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Dear Peter,
We’ve constructed our own MAESTER library for 10x 3’ GEX sequencing based on your fantastic method. I m currently trying to follow your pipeline for the analysis however met some proble…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
Alevin
**Describe the bug**
`Wrong barcode-end parameters`
`[2019-01-17 15:50:10.269] [jointLog] [error] wron…