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Hello, author, I am reading your article 《WisecondorX: improved copy number detection for routine shallow whole-genome sequencing》. I don't understand the segmental z-score calculation method. I hope …
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Hello, I am trying to install karyon. I am installing it on a cluster environment (without admin rights or apt or apt-get) mostly using conda. I am running into small things I am able to resolve, but …
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Too early for a lineage designation but worth watching:
About 10% of Omicrons (47) have the mutation S:346K which has already been seen in Mu and B.1.640.
Using the available sequences from GISA…
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When attempting to upload submission template with genotyping technology 'Exome-wide sequencing' to match existing option in Curation App dropdown menu...
![Screenshot 2021-10-26 at 15.26.07.png](htt…
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Hi !
I'm trying to run Canu on HPC and since Canu can "query the system for grid support, configure itself for the machines available in the grid, then submit itself to the grid for execution" I wo…
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Hi am I able to assemble genomes for metagenomic virus nanopore sequences for where I do not know the exact genome sizes?
Thanks!
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Hi there,
I am running Canu 2.2 and having a problem submitting jobs to the grid (slurm).
Would you please let me know if the grid setting is wrong? and how to solve it?
The commands I used:
`…
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@Jegelewicz @campmlc @dustymc
I am trying to link MVZ:Bird:191951 to its genome sequence.
The full specifications and sequence are available at https://vgp.github.io/genomeark/Chiroxiphia_lanc…
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First of all, thank you for developing hisat 3N. As a previous bismark user, I am excited by the rapid alignment capability of hisat 3N and its high mapping efficiency.
Using whole genome BS seq d…
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Hi Kamil,
I have run smudgeplot on my plant pathogenic species and the plots for all but 1 isolate turned out as diploid, as expected. The 1 that did not fit the expectation was predicted to be a p…