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Hello,
Thank you so much for the MetaMaps tool!
I believe I have been able to successfully perform a MetaMaps run, and the expected output files are produced.
I am interested in using the "fi…
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The morphological dataset has 54 hard topological constraints in a FBD dating analysis (attached). It fail to launch in both Mac (Big Sur 11.2.2) and Ubuntu (20.04.2 LTS). Mac gave "segmentation fault…
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Thanks for developing this new tool. Impressive.
After a quick reading, it seems that your tool use the species specific groups of sequences to do the classification for different species, similar…
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Hi I have 5 sites and would like to calculate the top five most abundant genera for each site. I have found code that does this for the who data set but not for each site/group?
This is the code i…
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### Context
In response to comment:
> I think we should generally be consistent with the nomenclature. I see for metadata you have nextclade_subtype with entries like DENV1/II. This is canonica…
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In time for each country at 10 p.m., Google Trent Keyword Report will be published with this issue comment.
- Korea
- France
- Swiss
- UK (United Kingdom)
- US (United States of America)
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For many pathogens, it would be super useful to be able to do at least a 'lite' version of QC analysis and mutation calling with just the reference sequence / i.e., without requiring a `tree.json` fil…
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Jotting down the outline of ingesting the metadata and sequences from https://github.com/andersen-lab/avian-influenza
1. Fetch tarball of https://github.com/andersen-lab/avian-influenza
2. Concate…
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The Dermoptera + Primates clade was christened Primatomorpha on the basis of paleontological and comparative anatomical data in 1991. (see Beard, K. C. 1991b. Vertical postures and climbing in the mor…
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There are no changes to the plot, with or without the drop_seqs inclusion within the function. I have run this with either a vector droplist (droplist_seqs = c("A) first and then using drop_seqs=dropl…