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Currently we have `kmc` as our genome size estimator on TheiaProk suite of workflows. This has shown to be widely inconsistent on ONT data, particularly when very long read sequences are present in th…
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Hi, I am wondering how to generate "human_mirna_SNP_pseudo_miRBase.fa" in "fasta.Libs" directory. It is quite different from "human_mature_miRBase.fa" as many miRNA ids are different between them in a…
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I have a scRNAseq samples SORTseq protocol, well plate based, I have this error when I do the run_numbat, my script only gets to do the hierarchical clustering, but then it stops, I have tried with di…
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# Story
As UCSD, so that I can ingest an NBS result message, I need observations provided by CDPH to use codes that I support.
## Pre-conditions
- We've identified a list of observation codes use…
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Hi @guipenedo , I used your substring dedup script to perform deduplication on a dump of cc and did some manual inspection. I find that some resulting duplicates a bit strange.
For example,
```
…
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I am running CGMAPTOOLS to get ASM calls from WGBS data on my sample. I ran the CGMAP step to convert to the ATCG format, performed SNV calling (bayes mode) and eventually submitted the job for ASM …
nmfad updated
9 months ago
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`sce
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Beginning with sequence-based searches of the literature via PaperBLAST and using the sequences acquired from PomBase, UniProtKB
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## 🚀 Feature
Allow plotting of "clonal trees" for bcell data, rooted on the germline.
## Motivation
B-cell repertoires are interesting because of SHM - you can group together different clonot…
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Hi,
I am using CellChat-V2 for the analysis of stereo-seq (cell-bin) data. Could you provide guidance on how to estimate the 'spot.diameter' and 'spot' parameters within 'scale.factors', as these a…