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**Are you using the latest release?** Yes
**Describe the bug**
I am missing the annotation of certain genes which seem to be not properly parsed by EggNog. Please any advice would be helpful I'm a…
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**Describe the bug**
The removal of `Matrix.utils` from CRAN means we need to remove it as a dependency from our code, as the package will no longer build
The only place that we use the function d…
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**Is your feature request related to a problem? Please describe.**
Write Snakemake run config to file and samples table
**Describe the solution you'd like**
Implement in `run/snakemake.py`
**A…
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### Description of the bug
Hi!
I'm running nf-core/scrnaseq v.2.1.0 but I've had some issues.
Here is the samplesheet1.csv:
sample,fastq_1,fastq_2
DP8400009886BL,DP8400009886BL_L01_7_1.fq.gz,…
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Hello,
I am struggling with Funannotate installation for a while and was hoping you could help me figuring it out how to make it work. For the installation I followed exactly the installation guide a…
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## COMPLETED
- [x] abacas (assigned @drpatelh)
- [x] agrvate (assigned @drpatelh)
- [x] bandage/image (assigned @drpatelh)
- [x] bismark/align (assigned @drpatelh)
- [x] bismark/deduplicat…
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https://mp.weixin.qq.com/s/twrBE7bxNxI2kvpI4G9G8Q
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https://mp.weixin.qq.com/s/twrBE7bxNxI2kvpI4G9G8Q
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Dear Dr.Franciscozorrilla,
when I "bash metaGEM.sh -t crossMapSeries -j 2 --nCores 24 -m 120 -h 24" it reported error "error parsing number of cores (--cores, -c, -j): must be inte…
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Hi Jon, I've run into some troubles with `funannotate predict`. Thanks for any help!
**Are you using the latest release?**
v.1.7.4
**Describe the bug**
funannotate predict` fails at `augustus_…