-
ref ANI estimation PR #1788
I've been using our forthcoming ANI utilities to estimate pairwise ANI between GTDB genomes. From these data, we can examine the average containment --> ANI relationshi…
-
Hello I just installed kitsune on my mac from the GitHub source. When I use the help command: `python3 kitsune.py --help` it outputs the normal message:
```
usage: kitsune []
Available commands:…
-
I think this snippet is in multiple pipelines and they're all starting to diverge.
https://github.com/nf-core/methylseq/pull/380#discussion_r1506715623
https://github.com/nf-core/methylseq/pull/38…
-
-
Thanks for this nice too! Does this tool also work for binning eukaryotic MAGs?
-
Hello, I am trying to Install Ray locally, but the compilation aborts with an error message.
I cloned the most recent github-repository and tried to compile it with this make command:
`make PREFIX=bui…
-
Hi, I was trying to make the sharkfin plot as you discussed in another [issue](https://github.com/tleonardi/nanocompore/issues/206). However, the shape of my plot doesn't match the shape you showed in…
-
Hi there,
I'm having issues running trinity in separate stages. My cluster has a time limit to 3 days so i have to run the script in separate stages. However, i have selected --no_distributed_trini…
-
Hi.
When I performed a de novo assembly using HIFI, I obtained a genome size of 1.7 Gb. Since there was no prior information available about my sample, I decided to estimate the genome size. When …
-
I have assembled for a genome a "suspected" highly hetrozygous genome using hifi.
The assembled genome size is 8.2G, which gives following BUSCO results.
Could you please help me understand how t…