-
I try to merge profile.db for each MAG, but then I found an error about config.db
Code: anvi-merge bam/*/PROFILE.db -o profile_merge -c contigdb/
Config Error: Someone downstream doesn't like yo…
-
I have another mOTU question. I’ve seen that you extended the mOTU quite a bit for different environments.
However, I would use mOTU on new environments e.g. soil. How can I know that a high fractio…
-
Hello there!
I have been trying to use Rosella for a while now, but I keep persistently running into issues when trying to execute it. I've lost count of how many fixes I've tried.
For context…
-
### What happened?
System - Ubuntu 18.04 with Nextflow 22.10.0 and wf-metagenomics v2.0.0 (b2bd2b89da)
Command - nextflow run epi2me-labs/wf-metagenomics --fastq /home/data1/Analyzed_data/metact…
-
I have a substantial Nanopore metagenomic dataset. It's ~500 Gbases now and it's possible that I might add to it. Most of it was generated using R10.4.1 flow cells with dorado-sup basecalling with the…
-
Hello, I've been trying to run the `binning-eukaryotic.py` script on a small assembly to predict eukaryotic MAGs. However, the process fails every time, regardless of whether I try to do the binning w…
-
Hi,
When I run SVABA with the metagenomics reads alignment to a large microbial reference, I get this error
```
Running region GUT_GENOME286887_234:1-1,697(*) on thread 139746049373952
Running r…
-
This needs to be done, @guille0387 detected which ViPhOGs belong to discontinued viral taxa such as the families _Siphoviridae_, _Myoviridae_, ...
Re-calculating the models is not so easy, but for …
-
Greeting,
I'm trying to integrate StrainXpress into [LMAS](https://github.com/B-UMMI/LMAS), a nextflow workflow enabling the benchmarking of traditional and metagenomic prokaryotic de novo assembly…
-
Hi, would it be possible to add the DMM algorithm to bluster? It's an algorithm that's commonly used in microbial ecology along with metagenomic & 16S rRNA count data.
We had functions related to it…