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I ran the command: `/share/org/HapHiC/haphic pipeline MM.p_ctg.fa MMHiC.filtered.bam 11` with the species karyotype of 2N=2X=22. The method used for genome assembly is "hifiasm + Hi-C". The N10-N90 va…
S-iff updated
3 weeks ago
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Hi @paoloshasta
following your suggestions, we re-basecalled an older Q10 dataset (best shasta assembly 3.7 MB N50) yesterday and created a new assembly. The `Nanopore-Plants-Apr2021` was the best…
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As we plan to have a large amount of sequencing runs requiring Modified basecalling on our promethion (2xGV100 GPU ) in the next months, we are testing a cluster where 4 x A100 80GB are available (2 x…
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**Are you using the latest release?**
`funannotate v1.8.11`.
**Describe the bug**
funannotate test is failing at the predict step with error "Not enough gene models 175 to train Augustus (200 re…
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Hello,
I'm trying to run chromunity on some prokaryotic pore-c data. I'm working through the tutorial, and am getting an error message when I try to create a Chromunity object for sliding window chro…
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Hello, I've just ran [cargo-bloat](https://github.com/RazrFalcon/cargo-bloat) on my [project](https://github.com/Discord-TTS/Bot) as I'm working on reducing compile times and binary sizes can be a pro…
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**System: MacOS 13.6.3**
**Canu version: canu 2.2**
**Input command:**
```
canu -d ecoli-gen3 -p ecoli-gen3 genomeSize=5m -pacbio E_coli_K12_PACBIO/ecoli_p6_25x.filtered.fastq
```
The fastq …
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Hi there,
I’ve come across a bit of a puzzle with my sequencing work. I ran three libraries on R10 flowcells and six on flongles, all multiplexed. Here’s the head-scratcher: every time I’ve basecal…
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As part or testing the pipeline with a larger dataset and more realistic files. It seems like one of the samples produced an assembly with lots of contigs. Based on the issue here: https://github.com/…
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