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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
Yes
**Describe the bug**
A clear and concise descr…
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Hello dear developers,
I am writing to ask you for some advice regarding the usage of your tool.
As of today, I've run a few tests on different viral genomes to test the tool, but I've always bump…
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Hi Erik
I've been running Seqwish with the output from minimap2 and edyeet for comparison, across multiple chromosomes and also testing with multiple whole genomes.
I've found the PAF files fro…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Feature Description
This feature involves implementing a DNA classification system using machine learning. The…
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This is the code they used in `CAMI II`
```
metaquast -r /path/to/set0-9/ref-genomes \
-t 24 --unique-mapping --no-icarus -o /path/to/output_dir \
-l megahit-103-df,megahit-113-df,megahit…
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Hello!
I am trying to run a PosiGene analysis using this command:
```
perl PosiGene.pl -o=test_run_new -tn=8 -as=AC -rs=AC:./Mollusks/AC_subset_renamed.fasta -ts=LS:./Mollusks/LS_subset_ren…
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Hi,
I have just started learning bowtie2. I encountered a problem with database indexing with bowtie2-build command: indexing runs through but the output doesn't have .rev files, thus preventing me…
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Hi @olearyna
I updated through conda --update, the version showing is 16.18.1, This is my code (I ran it with --debug as suggested):
datasets download gene accession --inputfile ~/Desktop/wp_1_…
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Dear Developers
I have been trying to install and run rambl but I have not been able to get it working. Would you be able to help?
Below is the test command and the screen output when running it…
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Hello, I'm trying to build a running tracer on a more modern version of python (3.8.10). SInce then, Bio.Alphabet has been removed from python, and the recommendation is that calls to it (IUPAC) can …