-
**Are you using the latest release?**
Yes, installed fun annotate via conda (v1.7.4, installed 4 days ago)
**Describe the bug**
After having installed fun annotate via conda I have been trying …
-
Hi,
I want to perform repeat-masking on my study genome. First, I generated de novo repeat library by RepeatModeler (consensi.fa.classified). In RepeatMasker step, I get two resulted with `-species` …
-
hello,
thanks for developing this useful tool for long reads. I have gotten a few hits in Dmel with multiple families listed in the same entry.
For example:
2L 15001967 15001970 …
-
Hi Daren,
Thanks for posting some really detailed work on Maker, especially with examples including custom masked repeats. I found a slight error with your `rmOutToGFF3custom` script. As it is writ…
-
Hi there,
I've been using STAR for a while now, but I have some new GTF files from a collaborator which give this out of range error during the indexing step.
Upon reading previous posts about simil…
-
Hi, I created a remote .json session that I can display by passing the session file in the browser URL.
However, I can't set the initial view/position.
http://epigenomegateway.wustl.edu/browser/?g…
-
Ilona and I have the same issue with raspir. It starts but creates no output files without giving any error messages or any other helpful output.
-
I use conda to install LTR_retriever :
conda create -n LTR_retriever
source activate LTR_retriever
conda install -c conda-forge perl perl-text-soundex
conda install -c bioconda cd-hit repeatmasker…
-
Hi there,
Would anyone mind confirming which Option 1 or 2 is the right gtf to use for humans run10x? Because when I ran velocyto for 10x, the .out file had 2 warnings as shown.
Thank you so mu…
-
Hello,
I ran EDTA on a **contig assembly** and obtained a repeat library. I would like to annotate the **scaffolded version** of the same assembly with that repeat library. Based on your code comme…