-
I just ran TELR using the following command:
telr -i /path/to/long/reads/1034.fastq -r /path/to/refgenome/Mguttatus_256_v2.0.fa -l /path/to/consensuslib/allTE-families.cons --out TELR_annotations
…
-
```
$ canu -p serum -d /lustre/project/taw/ONRPan/canu/serum genomeSize=4.8m maxInputCo
verage=100 -nanopore serum.fastq
perl: warning: Setting locale failed.
perl: warning: Please check that your…
-
Hi,
I want to generate a series of variants with GRCh38.fa, following the command:
```
mason_variator -ir ../genome.fa -ov genome.test.vcf
```
Then, I use this variants file and GRCh38.fa to s…
-
Hi,
I tried to run pav pipeline, and it seemed to work until Minimap2 mapping, but ended up at align_get_read_bed with "Segmentation fault (core dump)" . The followings are the messages.
Have you a…
-
Hi there,
I am trying to run ribotish on regular riboseq data from our lab.
Unfortunately, this already fails at the quality step. I mapped the reads to their reference (GRCm39) with a special ann…
-
Hello,
I am trying to run Cactus v2.2.4 on 12 mammal genomes.
Below is my command:
`srun cactus --realTimeLogging --disableCaching --cleanWorkDir=onSuccess --noLinkImports --noMoveExports --bin…
-
**Submitting author:** @cagret (Clement AGRET)
**Repository:** https://gite.lirmm.fr/doccy/RedOak
**Branch with paper.md** (empty if default branch):
**Version:** v0.1.5
**Editor:** @lpantano
**Revie…
-
Dear Dr. Song,
Thanks for developing this useful tool.
We are trying to align a tetraploid contig level genome to the tetraploid chromosome-scale genome, using ```anchorwave proali ```function.…
-
I tried running TensorSV purely in inference mode, but I encountered several errors that I was not able to circumvent.
I have an environment set up as described in the GitHub readme, with all the c…
-
I'm finding it takes ~25 minutes to load the various components of the indexes, without `-7` this is only a couple of minutes.
The loading of the core reference files up to the following message ru…