-
Hi, does CNVpytor works properly on data (notably VCF files) based on GRCh38 ref genome and chromosome nomenclature?
-
I've found that, in spite of using the option `--no-unal`, unmapped reads are still reported in the output file. This is the command I ran, single-ended alignment suppressing multimapping reads, using…
-
### Verify
* if you cannot compile/install , read https://github.com/lindenb/jvarkit/wiki/Compilation before submitting a new issue
* 1.8.0_162
### Subject of the issue
My input is a .bed file w…
-
**Describe the bug**
When running zUMIs 2.9.3b on an InDrop V3 library, the code gets to the samtools merge step and fails. Ive tried it with a 2.9.2 and 2.9.3a also but still the same issue. Also …
-
Hi,
I seem to be running into an error after the alignment step when the reads have to be paired. This is the error that I get
```
Run HiC-Pro 2.11.4
-------------------------------------------…
-
Hi there, paleomix team! Thanks as always for such a great pipeline 👍
I'm running into an odd error that I've never seen before, and I'm not sure if I need to worry about. I've successfully run pale…
-
**Type**: Bug
**NPE version**: 5.7.145+8047943308
**OS version**: Windows 10 - 2004/19041.450
**Installed from**: Microsoft Store
In case of a BUG:
- Opening some packages crashes the explorer.…
-
Hi There,
This is actually an old issue.
I am running nanocompore, it seems it is freezed.
`ps x` shows the processes status as below.
```
35514 ? Sl 0:22 /nfs/users2/ekis/hlingo/…
-
I have tried running your program with just one replicate per condition. As a result I got a
`PSIsigma_r10_ir3.sorted.txt` that consists just of one line:
> Event Region Gene Symbol Target Exon Eve…
-
**TODO**
- [x] Arguement parsing and polishing for human version of readcomb
- [x] Modify logging statistics for bam filtering readcomb
- [ ] More testing between bam filtering and human readable…