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MBR attempts to map identifications from one run onto peaks in another run. This is incompatible with the multiprotease search because it does not make sense to map IDs from one protease onto another …
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* **UniProt KeyWord (ID and label):**
please remove
UniProtKB:Q9BQ70 | TCF25 | enables | GO:0003677 DNA binding | ECO:0007322 IEA | GO_REF:0000043 | UniProtKB-KW:KW-0238 | 9606 Homo sapiens…
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The first process of train VAE was successful.
But an error occurred when train_ligand_binging_model.
polygon train_ligand_binding_model --uniprot_id Q9Y572O --binding_db_path /home/yanbosmu/Bioin…
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Hello,
Thank you for creating this wonderful software; I foresee great success!
I am trying to run a simple unconditional monomer from my PDB file using the README.md tutorials. So I have my envir…
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Hello,
I am using Kraken2 v2.1.2. When trying to download library `./kraken2-build --download-library viral --db viral_db` I get the following error.
> rsync: link_stat "/all/GCF/002/957/295/GCF…
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Hi There,
I was wondering if it is possible to define preferred representative sequences for clusters in cd-hit when there are identical sequences in a cluster.
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Hello,
I have been trying to run BRAKER for a while and I am running into some problems relating to protein-based annotation. I successfully ran BRAKER with rna-seq only, but when I run protein onl…
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Hi!
Thank you for the wonderful tool! I was testing this out earlier this week and ran into an issue as follows:
> INFO [job extract_protein] /tmp/48sbgcsb$ samtools \
faidx \
--output…
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Hi David,
I was recently using OrthoFinder to look for species-specific orthogroups in a new genome that we've assembled. However, I noticed that several of the orthogroups classified as species-sp…
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Hi, I am trying to model protein complexes with 2 or more proteins with different copy number for each of them. Usually, everything goes very well when the number of proteins or their copy number is l…