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Hi, when I ran the testing data, it shows the following error. after mapping, there is no 4322700.tmp.bam. Would you help figure it out. thanks!
```
PROCESSING prepping reads for McClintock
P…
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sr320 updated
2 years ago
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The newest version of RepeatMasker 4.1.1 [uses h5py and requires python 3](http://www.repeatmasker.org/RepeatMasker/), but this is not listed in the dependencies.
Since MAKER requires python 2 and …
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Dear developer,
I was trying to install Repeastmasker (current latest version 4.1.2) on both Mac (macOS 11.6 Big Sur on Intel) or linux RedHat server, but I was stuck at the same error message, pos…
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Hi dear developer,
The LTR_retriever accepts the -u parameter for LTR insertion time calculation while the EDTA not. The user have to recalculate by themselves. For my own, I'm afraid I may make mist…
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Hi Clément,
I wanted to increase the number of classified TEs from the dnaPipeTE sequences so I used deepTE per one of your suggestions in one of the other discussions. I want to combine the data f…
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**Describe the issue**
Aborting with a SIGHUP
**Reproduction steps**
time RepeatMasker -parallel 30 -species "Mus musculus" -html -gff -dir repeat/ Mus_musculus_c57bl6nj.C57BL_6NJ_v1.dna.topleve…
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Hi,
When I run the EDTA pipeline by singularity. I stagnate at the step of ProcessRepeats for several days. The command is "perl /opt/conda/share/RepeatMasker/ProcessRepeats -lib genome_chr.fasta…
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Hello there!
I want to add mobile element detection using retroseq (https://github.com/tk2/RetroSeq). Retroseq produces a vcf file, and is run in two steps, discovery, and calling:
1:discovery
…
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Hi there,
I've run RepeatMasker on a large .fasta file with a custom input library (also a .fasta) and most of the outputs are missing. This is the code I ran:
```
perl ~/RepeatMasker/RepeatMas…