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Is it possible to not only save the print_alignment to file rather than just stdout with the `--print_alignment` option but do this for each alignment found within a read in the case there are multipl…
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Hey, What steps should we use to allign the audios(non english). I see there is something called "Compute alignment dataset" which you guys use for the forward model.
What exactly does that help in…
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Nice suggestion from @aphillippy: add a new type of metrics measuring the ratio of NGA50 to NG50 (or vice versa; can be also applied to other similar metrics like NAx/Nx).
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Hi, I was previously using Diamond and did not have any problem when I updated the database. However this time I kept getting this error
```
DIAMOND/2.0.8 is loaded
diamond v2.0.8.146 (C) Max P…
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
Yes
**Describe the bug**
A clear and concise descr…
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I am currently performing polishing of a large eukaryotic genome (mouse) assembled with flye.
as noted in the documentation, I understand that the latest version of medaka is intended to be used d…
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## Background
fn4 is a relatedness monitoring system which stores SNV distances between reference-mapped sequences.
It also has sample clustering functionality. It would be desirable to have …
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Dear Heng,
I am trying to build a rgfa from two large genomes (>10Gb). They are both finished down to chromosomes. I get the following output:
```
[M::main::23.960*1.00] loaded the graph from "…
fbemm updated
3 years ago
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## Expected Behavior
Using these lines I tried to create a tsv file containing all alignment details for all clustered sequences, including the singletons:
```
mmseqs cluster sequenceDB resultDb …
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I've been working with the fasta files downloaded from here https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/.
What I've trying to do is to find repeat sequences across the different chromos…