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Dear Bo,
I'd like to thank you in advance for taking up your time with my request for help. I am pretty new to simuPOP and have been struggling to solve an error that I think seems to be rooted in …
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Hello!
This discussion is to propose the `free_annotation` terms to the Cell Ontology so that future researchers may use your specific terms rather than the generic ones that you had to use. Below ar…
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Hello,
For a single `dispatch`, I like using a custom `usage` string pattern like below:
```nim
dispatch(ntangle,
usage = "\nNAME\n ntangle - $doc\n" &
"USAGE\n $command $args\n\n" &
…
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This package needs to deal with the extra information that SLiM stores in a tree sequence, reading it easily, and creating it in tree sequences lacking it. These are defined [here](https://github.com…
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In the paper “Batch effects in single-cell Rna-sequencing data are corrected by matching mutual nearest neighbors”, the input data is counts, however, our expression profiles contain TPM or CPM values…
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Hi, as shown below, visualizing a `polygonGate` using `geom_gate()` and `geom_polygon()` is not consistent.
The `geom_polygon()` shape accurately reflects the shape I originally drew and intended, bu…
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Probably want to suppress table columns where the number of obs falls below a specified threshold.
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Dear,
I am unfamiliar with graph theory. Why do you convet the neighbour distance collections to exponentially related connectivities ? How to assign weights to the edges ? Does BBKNN construct the…
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HI,
So sorry for asking such a simple question, I am not good at statistics and confused about the RunCCA process.
I read your NBT paper (2018), it seems that you do CCA on two matrices: X and Y, wh…
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What's the best way to analyze a subpopulation with `srvyr`? My first thought was the `filter` function, but if rows are simply dropped from the data table then the confidence intervals could be incor…