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Currently the sources to load data from are part of the QueryParams model, which is supposed to be model representing the parameters for micro-track requests. In practice, the sources parameter is act…
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I think it would be very useful to create an "alignment viewer" that compares an alignment versus a reference which can show insertions /deletions/matches/mismatches
This can be seen as in some way…
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I got this error message.
`Traceback (most recent call last):
File "/home/unix/tstraub/.conda/envs/synerclust/lib/python2.7/multiprocessing/process.py", line 267, in _bootstrap
self.run()
…
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If we wanted to, in a single linear genome view, plot a "connection" between read pairs as a single row in a layout, then we need to define a multi-chromosome/displayed-region layout and a multi-chrom…
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Plots haven't been reimplemented in new unified genes view. This will require a reducer for storing global plots and selectors for local/global plots. Also, the "reference" sequence that selected trac…
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Received from email on Nov-3-2019
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Dear Dr. Tang,
Greetings!
I was trying to use jcvi to do synteny analysis, and encountered error reports as in attached files.
My system is centos …
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Hi Anvio team,
As of now, the user can highlight splits containing searched functions in the main visualization page. But when the split is inspected, the highlighting doesn't show up in the inspec…
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Hi @tangerzhang ,
I am working on a highly heterozygous diploid genome. We used long reads in the assembly. The assembly reference has been corrected for miss assemblies. We mapped the HiC reads an…
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In `smartdenovo.pl`, `wtgbo` is used only in zmo overlapper mode. When using dmo overlapper in `wtzmo`, is it necessary to use `wtgbo` to rescue overlaps? I noticed that some overlaps between reads of…
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Dear Authors,
I used Ragout on some viral genome and the analysis was very successful. However I can not use Ragout on all the viruses I usually work with because the minimum sequence size to be co…