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Hey,
I am getting a biotype related error:
`Runtime error:
Traceback (most recent call last):
File "/ebio/abt6_projects9/abt6_software/bin/Comparative-Annotation-Toolkit/env/local/lib/python…
fbemm updated
4 months ago
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Hello,
Thank you for providing this software.
I have produced some annotations using Helixer - I am now trying to process them using the KinFin pipeline described here: https://kinfin.readme.io/…
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I've run the test dataset twice:
- First run: `Analysis ended with 82 errors`
- Second run: `Analysis ended with 94 errors`
Reprex:
```bash
wget https://github.com/derijkp/scywalker/release…
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Hi,
I am stuck with a BiocParallel errors in rule AberrantExpression_pipeline_OUTRIDER_runOutrider_R (see below):
Sun Dec 17 13:50:51 2023: SizeFactor estimation ...
Sun Dec 17 13:50:52 2023: Con…
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Opening this ticket as a platform for discussion as suggest by @vanaukenk.
Following discussions within the GOA team, it has been decided that we will implement a procedure that will run periodical…
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- [x] Create the first version of input schema to bedboss (PEP will be used in PEPhub)
- [x] Sample name will be a digest of the bedfile, and link will be derived
Steps:
1. Investigate what meta…
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## Description
Hi,
I'm a long-term fan of the SPAdes suite.
In a study where matching metagenomes and metatranscriptomes are sequenced from microbial communities, and high quality MAGs are alre…
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https://www.pombase.org/gene/SPBC21C3.16c
GO:0032784 | regulation of DNA-templated transcription, elongation | IEA with ARBA00027284
this is now annotated to
co-transcriptional chromatin…
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### Description of bug
I installed multiqc with pip and cloned MultiQC_TestData into a gitpod instance. I ran multiqc version 1.21 on the MultiQC_TestData directory and this did not finish due to err…
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I am running the below code;
```
%%time
data = snap.pp.import_data(
fragment_file,
chrom_sizes=snap.genome.hg38,
sorted_by_barcode=False,
)
data
```
And I am receiving the be…