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Hi Kamil, I have troubles understanding my smudgeplot. I have used the following command to generate it
```
ls $folder/reads/*.fastq > $folder/FILES
srun kmc -k21 -t$threads -m64 -ci1 -cs10000 @F…
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GIven the interest in studies that involve tumor heterogeneity / subclonality, currently bcbio offers "out of the box" support for both somatic variants and CNVs. A useful metric that can be combined …
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Dear all
Please , how the SpeciesTreeAlignment.fa is generated in orthofinder? this file is located inside the Alignement directory it contains the alignment for different orthogroups. I want to kn…
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klp5, klp6
do not yet have phenotypes
- [x] increased chromosome loss ? (has a chromosome segregation phenotype)
- [x] elongated mitotic spindle ?
Csi1
- [x] is a kinetochore-SPB connector in…
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Hi,
I am writing here to seek your advice on using wgd for my study.
Based on the paper and manual, I first got my genome_cds.fasta, and then used this command-
```
wgd mcl --cds --mcl -s ge…
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I ran the following to generate the Species Tree:
```bash
python3 Zombi.py Ti species.tre output
```
where `species.tre` is the following:
```
(DUMMY:1,(((1:0,2:0):0,3:0):0,4:0):1);
```
…
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I don't think you can be precise about these. I remember looking.
the family has broad specificity.
http://amigo.geneontology.org/amigo/gene_product/PomBase:SPAC23A1.14c
'de novo' L-methionin…
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from
https://github.com/geneontology/go-annotation/issues/1873
for pombe
https://www.pombase.org/gene/SPBC23E6.09
SSn6 is a co repressor, it does nto bind to DNA directly (it only has TPR do…
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Hello,
Not an issue, just wanted to clarify some details concerning the Recon_Gene_Trees output.
Comparing the trees in the Gene_Trees output with the Recon_Gene_Trees output, am I correct in …