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Hi,
It's mentioned that Pacasus is "Tool from detecting and cleaning PacBio / Nanopore long reads after whole genome amplification".
I'm looking for a tool that can aligns a read to itself and look…
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Hi!
I have passed the run_pipeline_test.sh test.
Then I tried to run pipeline on AWS (m4.16xlarge) to analyze two different data, one is 1 G and the other is ~4 G. But the pipeline all failed at the…
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nanopolish crashes:
```
registering model t.007-base
registering model t.007-ONT
Warning: 14311 variants in span, region not called [10 3922]
Warning: 289 variants in span, region not called [3…
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Canu seems to like assembling the same thing multiple times, ending up with multiple assembled contigs that have similar sequences. The GFA v1 specification has two contig join categories that would b…
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Dear Nicolas,
I can see that a similar issue with seed retrieval was raised before, but I thought I should raise a new issue since this is for a new version of the program.
I have used NOVOPlas…
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Post your lay and scientific abstracts below. Aim for a maximum of 250 words for both. Thanks!
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I'm impressed by how cleanly `mccortex` installed and runs!
I got these warnings in `thread`
```
[16 Apr 2016 12:18:33-LOx][generate_paths.c:422] Warn: Reads may overlap in fragment: 151 + 151 > fra…
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Is it possible to allow smaller simulations (i.e. smaller `-x`)? At the moment, I receive the message
The value of -x should be set between 400 and 800
I have tried using `-o` (with `-x 1` a…
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I have been using the FALCON assembler for a highly repetitive plant genome. The results are pretty good, but like other assemblies I have created, I believe the repetitive nature of the genome is com…
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Is there interest to include goseq (http://dx.doi.org/doi:10.1186/gb-2010-11-2-r14 http://www.bioconductor.org/packages/release/bioc/html/goseq.html) into tools-iuc?
Is anybody already working on this…