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**Is your feature request related to a problem? Please describe.**
I would like to try using plassembler with dragonflye outputs, without wasting compute on rerunning flye in plassembler.
**Descri…
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Hello,
This ticket is to gather my review comments for the JOSS submission (https://github.com/openjournals/joss-reviews/issues/5397).
# Functionality
## Installation
- [x] #36
- Added a co…
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The dnaapler workflow crashes right after the BLAST step on some PacBio HiFi assemblies.
I've been running `dnaapler all` on bacterial assemblies of PacBio HiFi reads (made with [Flye](https://github…
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Dear Sir,
The mob_typer tool does not work when the --multi parameter is used to analyze a fasta file containing multiple contigs. However, it works properly when only the mob_typer command is used…
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The latest version of Plasmid crashes on instances of the Fabric server running on the latest Fabric loader version and Fabric API version.
https://mclo.gs/Oa4w1KX
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When running SvPileup on a BAM file aligned carefully to a circular genome (plasmid, mito) it generates:
1. A really well supported breakpoint using split-reads than span the origin
2. A _huge_ nu…
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Dear MaayanLab members,
Greetings, always thank you for offering the valuable public dataset.
I have a simple question about the data in the L1000 Consensus Signatures Coefficient Tables (Level 5)…
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### What happened?
When I run pLannotate (v1.2.0) on the assembly, I get a genbank formatted file which is not produced when running the ONT workflow.
Is the nextflow pLannotate wrapper somehow …
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Hi Dr. A.L. (Aldert) Zomer,
I have been trying to download the plasmid database using either the getdb.sh command or "rfplasmid --initialize", but I keep receiving a "connection refused" error. Is …
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Hi, dnaapler looks great and does nearly exactly what I need for my genome assemblies.
I had a few feature requests that would make it easier to run for an entire genome.
I often have assemblies…