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I am getting the following error while running Ragout software. I already set up the python of hal. I am getting this error after solving this problem [#85](https://github.com/ComparativeGenomicsToolk…
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Viewing the details of a specific reads alignment versus the reference can be useful, this is an example from genomeribbon.com (has "synteny" and dotplot style views)
![genomeribbon com__perma=E_Pa…
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Dear Haibao,
Thanks for this amazing software!
I wonder if I could use the result of orthofinder 2 with the annotation bedfiles together with MCscan.
I'm studying nematode genomes and they dive…
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The "macro-synteny" viewer from the deprecated search view and the Circos viewer from the deprecated multi view have not been reimplement in the new unified gene view. For now implement the maco-synte…
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**Submitting author:** @mjsull (Mitchell)
**Repository:** https://github.com/mjsull/chromatiblock/
**Version:** v1.0.0
**Editor:** @will-rowe
**Reviewers:** @telatin, @rpetit3
**Archive:** 10.528…
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Hi Haibao
Jcvi is an amazing job!
I just find that the color of genes when I do microsynteny were green and blue . I want to give the gene their own color. I can't not find the parameters used to ch…
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Hi, could I ask a question? In my analysis, I found for some ortholog gene groups, the paralog genes existed for some species, does it affect the evolution rate analysis?
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Hi Haibao,
I am trying to install the jcvi package using **python3.7 -m pip install jcvi**. I got the following error -
Defaulting to user installation because normal site-packages is not writ…
siva5 updated
4 years ago
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I am currently try to assemble a fungal genome with Canu-racon-pilon pipeline using Oxford nanopore reads and illumina short reads. My fungal genome size is estimated at 37.5 Mb. The nanopore reads ha…
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The track model can be useful for synteny, even though it doesn't necessarily fit the conventional notion of a track, so that users can edit colors, turn on and off an overlay, etc.
Some possible t…