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#### Which new datasets are being added with this release?
#### What is the sample breakdown (number of WGS, WXS, RNA-Seq, Panel, Methylation, other)?
Same as v14
#### What module(s) generated …
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**Issue Description:**
Struggling with identifying TCGA barcodes for samples in a manifest file downloaded from the 2020 GDC Data Portal. This is crucial for distinguishing between tumor and normal s…
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Ordering of groups in the Number at Risk table of survival chart seems incorrect.
Go to this [link](https://www.cbioportal.org/results/comparison?Z_SCORE_THRESHOLD=2.0&cancer_study_id=coadread_tcg…
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I'ḿ using one my old script (i wrote it 2 month ago), but now the function mut.to.sigs.input give me an error.
my command is:
`sigs.input = mut.to.sigs.input(Mut_for_sig, sample.id = "Sample",
…
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To whom it may concern,
Hi! I'm trying to run PSI estimation based on GTEx v8 as well as TCGA from your resources. I saw an example templete from your another git named "snaptron - experiments" tha…
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HI,
I am trying to reproduce your results for Camelyon 16. Can you please confirm the settings for features creation?
I am using deepzoom_tiler.py with following settings:
parser.add_argu…
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Hi, I am not a professional bioinformatics person. I am interested in the data with or without STK11 mutations. Could you please let me know which dataset that I can download? It would be great if the…
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https://mp.weixin.qq.com/s/fzc7ypYOq6XWCmYQQ-vxug
ixxmu updated
5 months ago
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Hello.
Can you upload a list of slide_id in TCGA-BRCA and their labels ?
I am following the [project HIPT](https://github.com/mahmoodlab/HIPT/tree/master/2-Weakly-Supervised-Subtyping/splits/10fol…
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Rebuilding existing datasets is unnecessary since the `XY.csv` is what is used to get items:
https://github.com/jyaacoub/MutDTA/blob/dd324d33ae001c0126c3c2aceba895a16944fb5a/src/data_prep/datasets.py…