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Hello, thank you so much for the qiime2r package. I recently tried to import my ANCOM-BC results (output of `qiime composition ancombc`) but it seems that its format (DataLoafPackageDirFmt) is not sup…
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Hi,
I found ANCOM from QIIME2.
I'd like to use ANCOM to identify associations between taxa and continuous sample metadata (such as PH).
I used the MaAsLin before I know the ANCOM.
Is the linear re…
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Dear Jamie,
My data contains 20samples(10samples per group, two groups) and 481 features,
I imported ancom funtion from skbio, here are my codes:
```
from skbio.stats.composition import ancom
fro…
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Hello,
I have used ANCOM-BC2 several times on categorical variables, but here I want to identify ASVs (16s) that significantly vary with a continuous variable (here the percent of settlement on ti…
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Hello,
Thanks to have created this tool.
Is it possible to have the latest version of ANCOM BC (v1.6) with this plugin?
Because the latest version of ANCOM BC v1.6 need R v4.2 but the QIIME2 en…
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My name is Nina Hua, and I'm an undergraduate student from the University of Texas at Austin. I didn't use your script (used the R package), but I was hoping to find answers here as well. I wanted to …
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Hello Frederick,
Thank you for creating ANCOM-BC!
I am running ANCOM-BC2 on a 16S marker-gene dataset, with the following commands:
out_pan = ancombc2(data = an_Pan, assay_name = "counts", …
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Now that the [ancombc2 paper](https://www.nature.com/articles/s41592-023-02092-7) has been published, it would be nice to add this method into q2-composition. @FrederickHuangLin we'd love to collabora…
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**Current Behavior**
The current QIIME 2 implementation allows modeling of an interaction term with a group:
$z = mx*y + b | c$
where $x$ is a continuous gradient component, $y$ is a categorical ex…
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Dear,
I find the ANCOM-BC approach to identify deferentially abundant taxa very interesting and was wondering if the estimated sample-specific offset term could be replaced by a known sampling frac…