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Hello, a newbie summer intern here, wanted some advice!!
While I was making some grammatical and technical edits to the differential data analysis(DAA) chapter, I was wondering how it will be like …
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I initially discovered this while building the 2024.5 docs, but also replicated locally. Within a 2024.5 amplicon environment (on mac OS) the command in PD mice that utilizes ancombc with `donor * gen…
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Hello,
I tried to install ANCOMBC in RStudio on Ubuntu 20.04 without success. Consequently, I tried installing it on Windows but encountered the same issue. By the way, I am using RStudio version 4…
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Dear @yiluheihei ,
Thanks for your efforts. Is it expected to not find any marker when running the run_ancombc() example?
```
data(enterotypes_arumugam)
ps microbiomeMarker-class inherited fr…
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ANCOMBC doesn't correctly adjust p-value when there is more than 1 contrast (i.e. 3 or more treatments), according to[ this comment](https://github.com/FrederickHuangLin/ANCOMBC/issues/64#issuecomment…
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Hi,
I installed q2-ANCOMBC with the qiime2-2022.8 version and followed the installation instructions, but can't make it work. I always get error messages like :
There was a problem with the comma…
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Hello, thank you so much for the qiime2r package. I recently tried to import my ANCOM-BC results (output of `qiime composition ancombc`) but it seems that its format (DataLoafPackageDirFmt) is not sup…
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Now that the [ancombc2 paper](https://www.nature.com/articles/s41592-023-02092-7) has been published, it would be nice to add this method into q2-composition. @FrederickHuangLin we'd love to collabora…
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I have the ANCOMBC R package with version "1.4.0", then I followed this tutorial: https://bioconductor.org/packages/devel/bioc/vignettes/ANCOMBC/inst/doc/ANCOMBC2.html,
but I can not run ancombc on t…
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### Description of the bug
I'm analyzing a 16S dataset with ~1,200 samples spread across 3 runs (unfortunately this dataset is not public yet so I can't provide a reproducible example). I've found a …