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Whenever trying to run GraphBin with an assembly graph coming from Canu, I keep getting the error when reading the reads " ERROR - Unexpected 'tig00XXXXX-XX-XXXXX' ". [....] Please make sure you have …
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Hello,
I'm trying to curate the assembly produced by hifiasm by reassembling the reads at the assembly tips with different parameters and assemblers. This would be bit more efficient if I could edi…
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Hi @ctb
I believe it was in your blog post on spacegraphcats that you mentioned that basically all metagenomic assembly graphs are connected, and thus an approach based on graph cuts would not wor…
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Hi there,
I'd be interested in mapping noisy long-reads to assembly graphs (in GFA format), to untangle paths through repetitive parts of the graphs.
Here is another github issue (https://github…
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I have already requested this for GraphBin, but would be great to get it in GraphBin2 and also in metaCoAG (great tools). Whenever trying to run GraphBin with an assembly graph coming from Canu, I kee…
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Hi,
Is there a way of getting BandageNG to output connected components as separate assembly graphs? I work with metagenomes and it would be extremely useful to be able to do this and then work on t…
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Could you please help in interpretation of these graphs for Illumina reads for a Cladocopium sp where ploidy level is not clear? Genomescope2 was given -p2 and -p1 flags
Is there a homozygous peak …
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Could you please tell your interpretation of this log file for a algae assembly attept and how to improve assembly contiguity for this highly heterogygous algal genome?
It is canu 2.2.
```canu -as…
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**PLEASE DO NOT MAKE SUPPORT REQUESTS HERE**
Please the Biostars forum instead:
https://www.biostars.org/new/post/?tag_val=vg
Ok I will post on Biostars later.
Hello dear friends!
Tha…
yeeus updated
1 month ago
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Hi,
I've import this plugin (https://github.com/miyamotok0105/unity-ml-agents/blob/master/docs/Using-TensorFlow-Sharp-in-Unity.md#using-your-own-trained-graphs)
Then run the Unity project.
![image]…