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Hi Dr. Jin,
I have single cell data from two different organs, A and B, respectively. I intend to find the ligand-receptor interaction pairings between the two organs. Therefore, I have directly me…
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Alevolar macrophage would be a good test case for cleaning up cell surface marker assertions.
The basic term can, I think, be defined very simply - these are macrophages that reside on the luminal …
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Dear authors of cellphoneDB, first of all, thanks for this very very useful tool!
I am using it to evaluate ligand-receptor interactions among different annotated cell type a scRNAseq dataset.
I am …
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R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY…
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Another form of sequence analysis is doing immune repertoire sequencing of the [VDJ recombination](https://en.wikipedia.org/wiki/V(D)J_recombination) locus in B and T cells.
For captured/enriched …
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GOBP_PROTEIN_MODIFICATION_BY_SMALL_PROTEIN_REMOVAL
GOBP_RETINA_DEVELOPMENT_IN_CAMERA_TYPE_EYE
GOBP_NEGATIVE_REGULATION_OF_INTERLEUKIN_6_PRODUCTION
GOBP_DETECTION_OF_BIOTIC_STIMULUS
GOBP_RESPONSE_T…
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The proposal has been made to obsolete terms with the pattern 'signaling involved in x', see https://github.com/geneontology/go-ontology/issues/25766
Note that it is possible that some terms here a…
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Hi,
Thank you for this very helpful package - I'm having a lot of fun plotting my data!
However, I'm having trouble plotting specific interactions which include multiple words (such as IL18-IL18…
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Hi there
I have the results from the CPDB and in several rows within the genes columns, there are 'integrin'. I'd like to know which integrin gene is that? As you know, there are several integrin g…
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I am under the impression that the direction of signaling (incoming versus outgoing) is dictated by which cell expresses the ligand, and which expresses the receptor. For example, if Cell A expresses…