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Hi,
Thank you for making this great tool! I have a question about the input required for this tool. By repertoire data did you mean airr-seq or bcr-seq data?
Thank you
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I am loading Trust4_report.tsv file using repLoad from immunarch with no error. But the error happens when I try the following:
I subset the original Trust4_report.tsv file into separate TCR and …
Sa753 updated
3 weeks ago
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## Bug report
### Expected behavior and actual behavior
I have a subworkflow that I'm importing two times and invoking like this:
```nextflow
include { ANNOTATE as ANNOTATE_BCR } from '../s…
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Hi, I just wonder if I can use this to calculate BCR distance if I replace the reference database file from TR to IG? Or are there any other things that need to be modified? Thanks a lot!
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Hi,
I was wondering whether there is a function inside vegan for calculating the Gini coefficient, as this is another diversity metric that is used a lot for TCR/BCR repertoire analysis?
Many th…
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Thanks for nice job, well done 👍
Naive question, I'm running nanopore at the single cell level, feeding it to the trust 4 to find TCR BCR receptors repertoire, my question is all BCR or TCR s are not…
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- [ ] Antigen affinity score
* Incorporates AVID-seq counts and total receptor counts (CITE-seq/GEX counts)
- [x] Add VDJ data from cellranger to Seurat object
- [x] Receptor diversity
* inver…
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Hello,
I am using TRUST4 on my RNAseq data to reconstruct BCR sequences. Since I am specifically interested in clonal reconstruction, sequence_id guides me on number and sizes of clonal groups (to be…
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Hello,
Thank you for developing so nice software: immunarch.
Thank you in advance for great help!
Best,
Yue
Please see atached files.
[P61_Tumor.csv](https://github.com/immunomind/immu…
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I hope you're doing well. I recently came across your paper, 'TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data,' published in Nature Methods. I was highly impressed by t…