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Hi!
Our analysis and the design of Scout, for historical reasons, heavily rely on CADD. However, there are now several new in silico prediction tools available. The advantage of CADD is that …
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When tracking phylogenies in real time, we often end up with extant (i.e. alive) taxa that are not leaf nodes. Some (possibly most or all?) bioinformatics and paleontology tools represent this scenari…
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There are a number of open issues. If you just want to discuss general direction feel free to add your thoughts or haven't quite figured out how to express it as an issue in this thread, anything goes…
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Project Lead: @homo-sapiens34
Mentor: @luispedro
Welcome to OLS-1! This issue will be used to track your project and progress during the program. Please use this checklist over the next few weeks …
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I am benchmarking the tools for balancing "compression and accessibility" of genotypes, and I have encountered several issues while trying to use GVC. These issues may prevent fair comparisons with th…
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Dependency requirements of pyarrow=14.0.2 limit gtfparse to be used with other bioinformatics tools.
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We need to do some symmetry operations on the asymmetric unit. An asymmetric unit is the smallest unique set of atomic coordinates needed to describe the repeating unit of a crystal. If we have a het…
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From Wei Song
Allowing the user to have flexibility and choose different bioinformatics tools, for example, between SOPA and SPARROW, to ensure the robustness of the analyzed results.
(from me n…
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Hello,
Could I get some information on why trying to instantiate a VariantRecord like `v = VariantRecord()` results in `TypeError: this class cannot be instantiated from Python`? Is this a design c…
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**Lab Name**: Bioinformatics and Data Science in Biotechnology Lab
**Department**: Biotechnology and Biomedical Engineering
**List of Experiments and Repositories**:
1: Writing and…